Whole Exome sequencing for the 1000 Genomes Project - SRA

SRX103411: Whole Exome sequencing for the 1000 Genomes Project
8 ILLUMINA (Illumina HiSeq 2000) runs: 24.8M spots, 4G bases, 2.6Gb downloads

Design: Whole Exome sequencing for the 1000 Genomes Project via in-solution hybrid selection

Submitted by: Broad Institute (BI)

Study: Exome sequencing of (KHV) Kinh in Ho Chi minh City, Vietnam HapMap population

Sample: Coriell HG01865

Library:

Name: Catch-88511

Instrument: Illumina HiSeq 2000

Strategy: WXS

Source: GENOMIC

Selection: Hybrid Selection

Layout: PAIRED

Spot descriptor:

1 forward barcode

Group tag	Basecalls
tagged_117	ACCAACTG

85 reverse

BI GSSR sample ID: 120488.0 
BI GSSR sample LSID: broadinstitute.org:bsp.prod.sample:25MRM 
BI project name: C469 
BI work request ID: 26159 

Name	Step	Program	Version
base caller	2011-09-12 08:37:04.0	GAPipeline	RTA1.12.4.2

Runs: 8 runs, 24.8M spots, 4G bases, 2.6Gb

Run	# of Spots	# of Bases	Size	Published
SRR359817	3,077,897	492.5M	332.9Mb	2011-10-31
SRR359825	3,134,893	501.6M	340.9Mb	2011-10-31
SRR359836	3,173,517	507.8M	343.9Mb	2011-10-31
SRR360065	2,760,503	441.7M	298.6Mb	2011-10-31
SRR360214	3,175,544	508.1M	346.5Mb	2011-11-01
SRR360227	3,162,458	506M	343.1Mb	2011-11-01
SRR360230	3,226,980	516.3M	349.6Mb	2011-11-01
SRR363063	3,122,821	499.7M	336.6Mb	2011-11-07

Supplemental Content

Gdi1 protein, partial [Tricholoma sp. 26 XXD-2021]
Gdi1 protein, partial [Tricholoma sp. 26 XXD-2021]
gi|2288963963|gb|UVH37839.1|

Protein
Rattus norvegicus niban apoptosis regulator 1 (Niban1), mRNA
Rattus norvegicus niban apoptosis regulator 1 (Niban1), mRNA
gi|15011896|ref|NM_022242.2|

Nucleotide
Homo sapiens cell-line MDA-MB-453 androgen receptor mRNA, complete cds
Homo sapiens cell-line MDA-MB-453 androgen receptor mRNA, complete cds
gi|5639998|gb|AF162704.1|

Nucleotide
Biopsy, Large-Core Needle
Biopsy, Large-Core Needle
The use of needles usually larger than 14-gauge to remove tissue samples large enough to retain cellular architecture for pathology examination.<br/>Year introduced: 2013

MeSH

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SRA